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ATF5 activating transcription factor 5 [ Sus scrofa (pig) ]

Gene ID: 100523675, updated on 8-Mar-2024

Summary

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Official Symbol
ATF5provided by VGNC
Official Full Name
activating transcription factor 5provided by VGNC
Primary source
VGNC:VGNC:85608
See related
Ensembl:ENSSSCG00000003201
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 626.8) and mixtures (RPKM 208.6) See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (54945067..54950142)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (50726686..50731281)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene PTOV1 extended AT-hook containing adaptor protein Neighboring gene polynucleotide kinase 3'-phosphatase Neighboring gene AKT1 substrate 1 Neighboring gene TBC1 domain family member 17 Neighboring gene interleukin 4 induced 1 Neighboring gene nucleoporin 62 Neighboring gene sialic acid binding Ig like lectin 11 Neighboring gene VRK serine/threonine kinase 3 Neighboring gene zinc finger protein 473

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    54945067..54950142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021094768.1 → XP_020950427.1  cyclic AMP-dependent transcription factor ATF-5

    UniProtKB/TrEMBL
    A0A4X1VRZ4, A0A8D0TD81, F1RH58
    Related
    ENSSSCP00000003473.2, ENSSSCT00000003556.4
    Conserved Domains (1) summary
    cd14692
    Location:209 → 271
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain

  2. XM_013998679.2 → XP_013854133.1  cyclic AMP-dependent transcription factor ATF-5

    UniProtKB/TrEMBL
    A0A4X1VRZ4, A0A8D0TD81, F1RH58
    Conserved Domains (1) summary
    cd14692
    Location:209 → 271
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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