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ATP11C ATPase phospholipid transporting 11C [ Sus scrofa (pig) ]

Gene ID: 100523658, updated on 8-Mar-2024

Summary

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Official Symbol
ATP11Cprovided by VGNC
Official Full Name
ATPase phospholipid transporting 11Cprovided by VGNC
Primary source
VGNC:VGNC:85635
See related
Ensembl:ENSSSCG00000012713
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 8.8), liver (RPKM 8.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
33
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (114394436..114575658, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (130614130..130659634, complement)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257820 Neighboring gene coagulation factor IX Neighboring gene MCF.2 cell line derived transforming sequence Neighboring gene protein transport protein SEC31-like Neighboring gene chromosome X CXorf66 homolog Neighboring gene microRNA mir-505 Neighboring gene HUWE1 associated protein modifying stress responses 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipid-transporting ATPase IG
Names
ATPase, class VI, type 11C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    114394436..114575658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021080199.1 → XP_020935858.1  phospholipid-transporting ATPase IG isoform X5

    UniProtKB/TrEMBL
    A0A8D1SJ07
    Conserved Domains (2) summary
    pfam16212
    Location:885 → 1112
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:89 → 997
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

  2. XM_021080194.1 → XP_020935853.1  phospholipid-transporting ATPase IG isoform X1

    UniProtKB/TrEMBL
    A0A8D1SMG5
    Conserved Domains (2) summary
    pfam16212
    Location:909 → 1136
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:89 → 1021
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

  3. XM_021080196.1 → XP_020935855.1  phospholipid-transporting ATPase IG isoform X2

    UniProtKB/TrEMBL
    A0A8D0TWE6
    Conserved Domains (2) summary
    pfam16212
    Location:909 → 1136
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:89 → 1021
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

  4. XM_021080200.1 → XP_020935859.1  phospholipid-transporting ATPase IG isoform X6

    UniProtKB/TrEMBL
    A0A8D1GXG8, A0A8D1SMG5, F1RQ73
    Related
    ENSSSCP00000013516.3, ENSSSCT00000013899.3
    Conserved Domains (2) summary
    pfam16212
    Location:862 → 1089
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:42 → 974
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

  5. XM_021080203.1 → XP_020935862.1  phospholipid-transporting ATPase IG isoform X9

    UniProtKB/TrEMBL
    A0A286ZST4, A0A8D1CVS0, A0A8D1SJ07
    Related
    ENSSSCP00000034531.1, ENSSSCT00000044077.1
    Conserved Domains (2) summary
    pfam16212
    Location:838 → 1065
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:42 → 950
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

  6. XM_021080202.1 → XP_020935861.1  phospholipid-transporting ATPase IG isoform X8

    UniProtKB/TrEMBL
    A0A8D1H5W9, A0A8D1SIY8, K7GSS2
    Related
    ENSSSCP00000030961.2, ENSSSCT00000036522.4
    Conserved Domains (2) summary
    pfam16212
    Location:862 → 1089
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:42 → 974
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

  7. XM_021080197.1 → XP_020935856.1  phospholipid-transporting ATPase IG isoform X3

    UniProtKB/TrEMBL
    A0A8D1SHX2
    Conserved Domains (2) summary
    pfam16212
    Location:909 → 1136
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:89 → 1021
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

  8. XM_021080198.1 → XP_020935857.1  phospholipid-transporting ATPase IG isoform X4

    UniProtKB/TrEMBL
    A0A8D1SIY8
    Conserved Domains (2) summary
    pfam16212
    Location:909 → 1136
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:89 → 1021
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

  9. XM_021080201.1 → XP_020935860.1  phospholipid-transporting ATPase IG isoform X7

    UniProtKB/TrEMBL
    A0A287AFD7, A0A8D0MQD0, A0A8D1SHX2
    Related
    ENSSSCP00000042697.1, ENSSSCT00000046314.3
    Conserved Domains (2) summary
    pfam16212
    Location:862 → 1089
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cd02073
    Location:42 → 974
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

RNA

  1. XR_002340696.1 RNA Sequence

  2. XR_002340697.1 RNA Sequence

  3. XR_002340698.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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