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ALKBH4 alkB homolog 4, lysine demethylase [ Sus scrofa (pig) ]

Gene ID: 100520070, updated on 8-Mar-2024

Summary

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Official Symbol
ALKBH4provided by VGNC
Official Full Name
alkB homolog 4, lysine demethylaseprovided by VGNC
Primary source
VGNC:VGNC:85259
See related
Ensembl:ENSSSCG00000029300
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 6.4), lung (RPKM 5.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (9795993..9806230, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (9705924..9713496)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene PRKR interacting protein 1 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 pseudogene Neighboring gene uncharacterized LOC110259892 Neighboring gene ORAI calcium release-activated calcium modulator 2 Neighboring gene leucine rich repeats and WD repeat domain containing 1 Neighboring gene RNA polymerase II subunit J Neighboring gene RAS p21 protein activator 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxidative demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in contractile ring IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in midbody IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 4
Names
alkB, alkylation repair homolog 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    9795993..9806230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003480995.4 → XP_003481043.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 4

    See identical proteins and their annotated locations for XP_003481043.1

    UniProtKB/TrEMBL
    A0A8D0ITN6, A0A8D0YQ23, F1RKF4
    Related
    ENSSSCP00000023807.3, ENSSSCT00000022336.4
Nucleotide Protein
Heading Accession and Version

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