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ARFIP1 ADP ribosylation factor interacting protein 1 [ Sus scrofa (pig) ]

Gene ID: 100518024, updated on 8-Mar-2024

Summary

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Official Symbol
ARFIP1provided by VGNC
Official Full Name
ADP ribosylation factor interacting protein 1provided by VGNC
Primary source
VGNC:VGNC:85453
See related
Ensembl:ENSSSCG00000009010
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 11.1), kidney (RPKM 9.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (76168731..76270554, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (80737499..80791563, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 2 Neighboring gene FH2 domain containing 1 Neighboring gene uncharacterized LOC110262136 Neighboring gene tigger transposable element derived 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arfaptin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252233.1 → NP_001239162.1  arfaptin-1

    Status: VALIDATED

    Source sequence(s)
    AK230925
    UniProtKB/TrEMBL
    A0A4X1SRI0, A0A8D0HLG4, A0A8D0VLW1
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    76168731..76270554 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021100361.1 → XP_020956020.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  2. XM_021100360.1 → XP_020956019.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SRM6, A0A8D0PPW4
    Conserved Domains (1) summary
    cd07660
    Location:123 → 323
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  3. XM_021100370.1 → XP_020956029.1  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    A0A287B3V9, A0A4X1SPZ7, A0A8D0VP41
    Conserved Domains (1) summary
    cd07660
    Location:152 → 352
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  4. XM_021100367.1 → XP_020956026.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1SRI0, A0A8D0HLG4, A0A8D0VLW1
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  5. XM_021100374.1 → XP_020956033.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SRM6, A0A8D0PPW4
    Conserved Domains (1) summary
    cd07660
    Location:123 → 323
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  6. XM_021100371.1 → XP_020956030.1  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    A0A287B3V9, A0A4X1SPZ7, A0A8D0VP41
    Conserved Domains (1) summary
    cd07660
    Location:152 → 352
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  7. XM_021100377.1 → XP_020956036.1  arfaptin-1 isoform X5

    UniProtKB/TrEMBL
    A0A286ZPE2, A0A4X1SQQ3, A0A8D1G0K5, A0A8D1JVB1
    Related
    ENSSSCP00000033466.1, ENSSSCT00000059149.3
    Conserved Domains (1) summary
    cd07660
    Location:166 → 310
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  8. XM_021100362.1 → XP_020956021.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  9. XM_021100375.1 → XP_020956034.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SRM6, A0A8D0PPW4
    Conserved Domains (1) summary
    cd07660
    Location:123 → 323
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  10. XM_021100368.1 → XP_020956027.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1SRI0, A0A8D0HLG4, A0A8D0VLW1
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  11. XM_021100372.1 → XP_020956031.1  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    A0A287B3V9, A0A4X1SPZ7, A0A8D0VP41
    Conserved Domains (1) summary
    cd07660
    Location:152 → 352
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  12. XM_021100363.1 → XP_020956022.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  13. XM_021100376.1 → XP_020956035.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SRM6, A0A8D0PPW4
    Conserved Domains (1) summary
    cd07660
    Location:123 → 323
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  14. XM_021100369.1 → XP_020956028.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1SRI0, A0A8D0HLG4, A0A8D0VLW1
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  15. XM_021100364.1 → XP_020956023.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
    Related
    ENSSSCP00000038734.2, ENSSSCT00000040238.3
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  16. XM_021100373.1 → XP_020956032.1  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    A0A287B3V9, A0A4X1SPZ7, A0A8D0VP41
    Related
    ENSSSCP00000050951.2, ENSSSCT00000059627.2
    Conserved Domains (1) summary
    cd07660
    Location:152 → 352
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  17. XM_021100366.1 → XP_020956025.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  18. XM_021100365.1 → XP_020956024.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  19. XM_021100378.1 → XP_020956037.1  arfaptin-1 isoform X6

    Conserved Domains (1) summary
    cd07660
    Location:34 → 234
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin
Nucleotide Protein
Heading Accession and Version

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