U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ADAMDEC1 ADAM like decysin 1 [ Sus scrofa (pig) ]

Gene ID: 100517917, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
ADAMDEC1provided by VGNC
Official Full Name
ADAM like decysin 1provided by VGNC
Primary source
VGNC:VGNC:85071
See related
Ensembl:ENSSSCG00000009645
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 2.7), subcutaneous adipose (RPKM 2.6) and 5 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 14
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (8455964..8483308)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (9498092..9512852)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene stanniocalcin 1 Neighboring gene ADAM metallopeptidase domain 28 Neighboring gene uncharacterized LOC110256883 Neighboring gene ADAM metallopeptidase domain 7 Neighboring gene sodium/potassium-transporting ATPase subunit alpha-1 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ADAM DEC1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    8455964..8483308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074375.1 → XP_020930034.1  ADAM DEC1

    UniProtKB/TrEMBL
    A0A4X1VDN5
    Related
    ENSSSCP00000035421.3, ENSSSCT00000055181.3
    Conserved Domains (3) summary
    pfam01562
    Location:30 → 159
    Pep_M12B_propep; Reprolysin family propeptide
    cl10507
    Location:417 → 449
    Disintegrin
    cl26139
    Location:205 → 398
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease

  2. XM_003132811.3 → XP_003132859.2  ADAM DEC1

    UniProtKB/TrEMBL
    A0A4X1VDN5
    Conserved Domains (3) summary
    pfam01562
    Location:30 → 159
    Pep_M12B_propep; Reprolysin family propeptide
    cl10507
    Location:417 → 449
    Disintegrin
    cl26139
    Location:205 → 398
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous