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A1BG alpha-1-B glycoprotein [ Sus scrofa (pig) ]

Gene ID: 100516980, updated on 8-Mar-2024

Summary

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Official Symbol
A1BGprovided by VGNC
Official Full Name
alpha-1-B glycoproteinprovided by VGNC
Primary source
VGNC:VGNC:84932
See related
Ensembl:ENSSSCG00000004001
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 1007.6) and mixtures (RPKM 352.9) See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (62935419..62939622, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (57653277..57657392, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene zinc finger protein 8 Neighboring gene uncharacterized LOC100626788 Neighboring gene ribosomal protein S5 Neighboring gene ring finger protein 225

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
alpha-1B-glycoprotein
Names
Alpha-1B-glycoprotein
Plasma protein PO2-F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    62935419..62939622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003128132.6 → XP_003128180.1  alpha-1B-glycoprotein

    UniProtKB/TrEMBL
    A0A8D0P4R6, A0A8D0RPC2
    Related
    ENSSSCP00000004323.3, ENSSSCT00000004424.5
    Conserved Domains (3) summary
    smart00410
    Location:226 → 282
    IG_like; Immunoglobulin like
    pfam13895
    Location:219 → 304
    Ig_2; Immunoglobulin domain
    cl11960
    Location:409 → 498
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P39092.1 GenPept UniProtKB/Swiss-Prot:P39092

Gene LinkOut

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