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ATP2C2 ATPase secretory pathway Ca2+ transporting 2 [ Sus scrofa (pig) ]

Gene ID: 100514770, updated on 8-Mar-2024

Summary

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Official Symbol
ATP2C2provided by VGNC
Official Full Name
ATPase secretory pathway Ca2+ transporting 2provided by VGNC
Primary source
VGNC:VGNC:85653
See related
Ensembl:ENSSSCG00000002671
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 3.3), lung (RPKM 2.2) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ATP2C2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
27
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (4237331..4313273, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (4664868..4737426, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene coactosin like F-actin binding protein 1 Neighboring gene MTOR associated protein, eak-7 homolog Neighboring gene uncharacterized LOC106507552 Neighboring gene WAP four-disulfide core domain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-transporting ATPase type 2C member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    4237331..4313273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003126826.3 → XP_003126874.1  calcium-transporting ATPase type 2C member 2

    UniProtKB/TrEMBL
    A0A5G2QSB0, A0A8D0XSU5, A0A8D1M439, A0A8D1V891
    Related
    ENSSSCP00000067009.1, ENSSSCT00000087805.1
    Conserved Domains (6) summary
    TIGR01522
    Location:55 → 932
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase
    COG4087
    Location:587 → 710
    COG4087; Soluble P-type ATPase [General function prediction only]
    pfam00122
    Location:137 → 368
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:757 → 929
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:63 → 115
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:441 → 524
    Cation_ATPase; Cation transport ATPase (P-type)

RNA

  1. XR_002344471.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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