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ASB16 ankyrin repeat and SOCS box containing 16 [ Sus scrofa (pig) ]

Gene ID: 100514598, updated on 8-Mar-2024

Summary

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Official Symbol
ASB16provided by VGNC
Official Full Name
ankyrin repeat and SOCS box containing 16provided by VGNC
Primary source
VGNC:VGNC:98974
See related
Ensembl:ENSSSCG00000039673
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in longissimus dorsi muscle (RPKM 24.4), psoas major muscle (RPKM 14.7) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (19033471..19040481, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (19321709..19324766)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene upstream binding transcription factor Neighboring gene ataxin 7 like 3 Neighboring gene transmembrane and ubiquitin like domain containing 2 Neighboring gene homologous recombination factor with OB-fold Neighboring gene histone deacetylase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SOCS box protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    19033471..19040481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066898.1 → XP_020922557.1  ankyrin repeat and SOCS box protein 16

    UniProtKB/TrEMBL
    A0A480DL53, A0A4X1TR36, A0A8D1M139, A0A8D1RFM9
    Related
    ENSSSCP00000051614.2, ENSSSCT00000059515.3
    Conserved Domains (5) summary
    cd00204
    Location:211 → 325
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd03716
    Location:503 → 544
    SOCS_ASB_like; SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable ...
    sd00045
    Location:240 → 270
    ANK; ANK repeat [structural motif]
    cl26072
    Location:141 → 279
    Ank_5; Ankyrin repeats (many copies)
    cl26073
    Location:241 → 429
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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