U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif 6 [ Sus scrofa (pig) ]

Gene ID: 100513765, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
ADAMTS6provided by VGNC
Official Full Name
ADAM metallopeptidase with thrombospondin type 1 motif 6provided by VGNC
Primary source
VGNC:VGNC:85086
See related
Ensembl:ENSSSCG00000016943
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 6.1), lung (RPKM 5.4) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 16
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (43702519..44010820, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (46987181..47283577, complement)

Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene CWC27 spliceosome associated cyclophilin Neighboring gene uncharacterized LOC110257245 Neighboring gene uncharacterized LOC106506514 Neighboring gene centromere protein K Neighboring gene uncharacterized LOC110257246 Neighboring gene peptidylprolyl isomerase domain and WD repeat containing 1 Neighboring gene tripartite motif containing 23

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

    Range
    43702519..44010820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021076778.1 → XP_020932437.1  A disintegrin and metalloproteinase with thrombospondin motifs 6

    UniProtKB/TrEMBL
    A0A4X1UT15, A0A5G2R3K5, A0A8D0NQX9, A0A8D1B5M9, F1SKU0
    Related
    ENSSSCP00000071666.2, ENSSSCT00000089457.2
    Conserved Domains (5) summary
    smart00209
    Location:561 → 613
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:250 → 465
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01562
    Location:43 → 191
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:719 → 829
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1083 → 1115
    PLAC; PLAC (protease and lacunin) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous