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ABCC3 ATP binding cassette subfamily C member 3 [ Sus scrofa (pig) ]

Gene ID: 100513231, updated on 8-Mar-2024

Summary

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Official Symbol
ABCC3provided by VGNC
Official Full Name
ATP binding cassette subfamily C member 3provided by VGNC
Primary source
VGNC:VGNC:84957
See related
Ensembl:ENSSSCG00000017561
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in lung (RPKM 6.0), liver (RPKM 5.8) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
31
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (26920764..26978389)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (27060930..27117540)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 20 Neighboring gene calcium voltage-gated channel subunit alpha1 G Neighboring gene ankyrin repeat domain 40 Neighboring gene LUC7 like 3 pre-mRNA splicing factor Neighboring gene ANKRD40 C-terminal like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: canalicular multispecific organic anion transporter 2
Names
ATP-binding cassette, sub-family C (CFTR/MRP), member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    26920764..26978389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003131575.6 → XP_003131623.4  LOW QUALITY PROTEIN: canalicular multispecific organic anion transporter 2

    UniProtKB/TrEMBL
    A0A5G2R2F8
    Related
    ENSSSCP00000071284.1, ENSSSCT00000078746.1
    Conserved Domains (1) summary
    cl26602
    Location:7 → 1528
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Nucleotide Protein
Heading Accession and Version

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