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ATXN7L3 ataxin 7 like 3 [ Sus scrofa (pig) ]

Gene ID: 100511716, updated on 8-Mar-2024

Summary

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Official Symbol
ATXN7L3provided by VGNC
Official Full Name
ataxin 7 like 3provided by VGNC
Primary source
VGNC:VGNC:85694
See related
Ensembl:ENSSSCG00000017362
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 17.4), ovary (RPKM 16.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (19012324..19020136)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (19332402..19337186, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene solute carrier family 4 member 1 Neighboring gene uncharacterized LOC110255996 Neighboring gene upstream binding transcription factor Neighboring gene transmembrane and ubiquitin like domain containing 2 Neighboring gene ankyrin repeat and SOCS box containing 16 Neighboring gene homologous recombination factor with OB-fold

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DUBm complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-7-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    19012324..19020136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066884.1 → XP_020922543.1  ataxin-7-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TQU7
    Conserved Domains (2) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)
    pfam08313
    Location:234 → 263
    SCA7; SCA7, zinc-binding domain

  2. XM_021066885.1 → XP_020922544.1  ataxin-7-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A4X1TL01, A0A4X1TQU7, A0A8D1EW77
    Conserved Domains (2) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)
    pfam08313
    Location:208 → 237
    SCA7; SCA7, zinc-binding domain

  3. XM_013980916.2 → XP_013836370.1  ataxin-7-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TQU7
    Conserved Domains (2) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)
    pfam08313
    Location:234 → 263
    SCA7; SCA7, zinc-binding domain

  4. XM_003482973.4 → XP_003483021.1  ataxin-7-like protein 3 isoform X3

    See identical proteins and their annotated locations for XP_003483021.1

    UniProtKB/TrEMBL
    A0A4X1TQU7, F1RQY2
    Related
    ENSSSCP00000018397.3, ENSSSCT00000018901.5
    Conserved Domains (2) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)
    pfam08313
    Location:215 → 244
    SCA7; SCA7, zinc-binding domain

  5. XM_013980918.2 → XP_013836372.1  ataxin-7-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A4X1TQU7
    Conserved Domains (2) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)
    pfam08313
    Location:227 → 256
    SCA7; SCA7, zinc-binding domain

  6. XM_013980917.2 → XP_013836371.1  ataxin-7-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TQU7
    Conserved Domains (2) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)
    pfam08313
    Location:234 → 263
    SCA7; SCA7, zinc-binding domain
Nucleotide Protein
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