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AHCTF1 AT-hook containing transcription factor 1 [ Sus scrofa (pig) ]

Gene ID: 100511581, updated on 8-Mar-2024

Summary

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Official Symbol
AHCTF1provided by VGNC
Official Full Name
AT-hook containing transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:96050
See related
Ensembl:ENSSSCG00000010863
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 9.0), kidney (RPKM 8.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
38
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (15042168..15121885)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (17361477..17440847)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene coenzyme Q8A Neighboring gene CDC42 binding protein kinase alpha Neighboring gene kinesin-like protein KIF28P Neighboring gene saccharopine dehydrogenase (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein ELYS

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    15042168..15121885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021064442.1 → XP_020920101.1  protein ELYS isoform X2

    UniProtKB/TrEMBL
    A0A4X1T713, A0A8D0ILL0, K9IVS9
    Related
    ENSSSCP00000037183.2, ENSSSCT00000047033.3
    Conserved Domains (3) summary
    pfam05110
    Location:1894 → 2264
    AF-4; AF-4 proto-oncoprotein
    pfam13934
    Location:725 → 946
    ELYS; Nuclear pore complex assembly
    pfam16687
    Location:2 → 489
    ELYS-bb; beta-propeller of ELYS nucleoporin

  2. XM_021064443.1 → XP_020920102.1  protein ELYS isoform X2

    UniProtKB/TrEMBL
    A0A4X1T713, A0A8D0ILL0, K9IVS9
    Related
    ENSSSCP00000011581.4, ENSSSCT00000011885.5
    Conserved Domains (3) summary
    pfam05110
    Location:1894 → 2264
    AF-4; AF-4 proto-oncoprotein
    pfam13934
    Location:725 → 946
    ELYS; Nuclear pore complex assembly
    pfam16687
    Location:2 → 489
    ELYS-bb; beta-propeller of ELYS nucleoporin

  3. XM_021064441.1 → XP_020920100.1  protein ELYS isoform X1

    UniProtKB/TrEMBL
    A0A8D0U8C0
    Related
    ENSSSCP00000070827.2, ENSSSCT00000080963.2
    Conserved Domains (3) summary
    pfam05110
    Location:2003 → 2373
    AF-4; AF-4 proto-oncoprotein
    pfam13934
    Location:834 → 1055
    ELYS; Nuclear pore complex assembly
    pfam16687
    Location:111 → 598
    ELYS-bb; beta-propeller of ELYS nucleoporin
Nucleotide Protein Strain
Heading Accession and Version

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