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D730003I15Rik RIKEN cDNA D730003I15 gene [ Mus musculus (house mouse) ]

Gene ID: 100504360, updated on 8-Feb-2024

Summary

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Official Symbol
D730003I15Rikprovided by MGI
Official Full Name
RIKEN cDNA D730003I15 geneprovided by MGI
Primary source
MGI:MGI:1925971
See related
Ensembl:ENSMUSG00000073478 AllianceGenome:MGI:1925971
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in genital fat pad adult (RPKM 4.8), bladder adult (RPKM 2.7) and 25 other tissues See more
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Genomic context

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See D730003I15Rik in Genome Data Viewer
Location:
1 H6; 1 96.28 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (190956651..190957884)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (191224454..191225687)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene golgi associated RAB2 interactor family member 4 Neighboring gene STARR-positive B cell enhancer ABC_E4405 Neighboring gene STARR-seq mESC enhancer starr_03429 Neighboring gene activating transcription factor 3 Neighboring gene STARR-positive B cell enhancer ABC_E2027 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:193017813-193017996 Neighboring gene STARR-positive B cell enhancer mm9_chr1:193021775-193022076 Neighboring gene STARR-positive B cell enhancer ABC_E1578 Neighboring gene STARR-positive B cell enhancer ABC_E4407 Neighboring gene STARR-positive B cell enhancer ABC_E7786 Neighboring gene STARR-positive B cell enhancer mm9_chr1:193099421-193099721 Neighboring gene STARR-positive B cell enhancer ABC_E3354 Neighboring gene STARR-positive B cell enhancer ABC_E11113 Neighboring gene STARR-positive B cell enhancer ABC_E7787 Neighboring gene neuron derived neurotrophic factor Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_151547.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA839082, AC115896, AK021325
    Related
    ENSMUST00000242612.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    190956651..190957884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033188.1: Suppressed sequence

    Description
    NM_001033188.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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