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atg9a autophagy related 9A [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497686, updated on 25-Apr-2024

Summary

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Official Symbol
atg9aprovided by Xenbase
Official Full Name
autophagy related 9Aprovided by Xenbase
Primary source
Xenbase:XB-GENE-984232
See related
Ensembl:ENSXETG00000019294
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (83970535..83990206)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (78637693..78658799)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 Neighboring gene zinc finger, AN1-type domain 2B Neighboring gene uncharacterized LOC116407833

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within autophagy IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
autophagy-related protein 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    83970535..83990206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970947.3 → XP_012826401.2  autophagy-related protein 9A

    UniProtKB/TrEMBL
    A0A6I8QAL0, A0A6I8SDC7, A0A6I8SYF7
    Related
    ENSXETP00000098693.2, ENSXETT00000088762.2
    Conserved Domains (1) summary
    pfam04109
    Location:37 → 523
    APG9; Autophagy protein Apg9

  2. XM_012970948.3 → XP_012826402.2  autophagy-related protein 9A

    UniProtKB/TrEMBL
    A0A6I8QAL0, A0A6I8SDC7, A0A6I8SYF7
    Conserved Domains (1) summary
    pfam04109
    Location:37 → 523
    APG9; Autophagy protein Apg9

  3. XM_012970949.3 → XP_012826403.2  autophagy-related protein 9A

    UniProtKB/TrEMBL
    A0A6I8QAL0, A0A6I8SDC7, A0A6I8SYF7
    Related
    ENSXETP00000090560.2, ENSXETT00000069487.2
    Conserved Domains (1) summary
    pfam04109
    Location:37 → 523
    APG9; Autophagy protein Apg9

  4. XM_012970946.3 → XP_012826400.2  autophagy-related protein 9A

    UniProtKB/TrEMBL
    A0A6I8QAL0, A0A6I8SDC7, A0A6I8SYF7
    Conserved Domains (1) summary
    pfam04109
    Location:37 → 523
    APG9; Autophagy protein Apg9

  5. XM_012970950.3 → XP_012826404.2  autophagy-related protein 9A

    UniProtKB/TrEMBL
    A0A6I8QAL0, A0A6I8SDC7, A0A6I8SYF7
    Conserved Domains (1) summary
    pfam04109
    Location:37 → 523
    APG9; Autophagy protein Apg9

  6. XM_002933948.5 → XP_002933994.3  autophagy-related protein 9A

    UniProtKB/TrEMBL
    A0A6I8QAL0, A0A6I8SDC7, A0A6I8SYF7
    Conserved Domains (1) summary
    pfam04109
    Location:37 → 523
    APG9; Autophagy protein Apg9

  7. XM_012970951.3 → XP_012826405.2  autophagy-related protein 9A

    UniProtKB/TrEMBL
    A0A6I8QAL0, A0A6I8SDC7, A0A6I8SYF7
    Conserved Domains (1) summary
    pfam04109
    Location:37 → 523
    APG9; Autophagy protein Apg9
Nucleotide Protein Strain
Heading Accession and Version

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