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slitrk2 SLIT and NTRK like family member 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497153, updated on 8-Mar-2024

Summary

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Official Symbol
slitrk2provided by Xenbase
Official Full Name
SLIT and NTRK like family member 2provided by Xenbase
Primary source
Xenbase:XB-GENE-964776
See related
Ensembl:ENSXETG00000004288
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See slitrk2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (56407319..56411035)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (35221307..35225290)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101732163 Neighboring gene uncharacterized LOC105948073 Neighboring gene fragile X messenger ribonucleoprotein 1 Neighboring gene AF4/FMR2 family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within axonogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SLIT and NTRK-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    56407319..56411035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004916883.4 → XP_004916940.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    A0A7D9NJL6
    Related
    ENSXETP00000009333.4, ENSXETT00000009333.6
    Conserved Domains (7) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:44 → 197
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:111 → 170
    LRR_8; Leucine rich repeat
    cl00388
    Location:728 → 822
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein Strain
Heading Accession and Version

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