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alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100495476, updated on 2-May-2024

Summary

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Official Symbol
alkbh3provided by Xenbase
Official Full Name
alkB homolog 3, alpha-ketoglutarate-dependent dioxygenaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-5967038
See related
Ensembl:ENSXETG00000022230
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (9975452..9984810)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (3214270..3223558)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116410521 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12 Neighboring gene uncharacterized protein C11orf96 homolog Neighboring gene chromosome 4 C11orf96 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cilium assembly IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 3
Names
alkB, alkylation repair homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    9975452..9984810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002937298.5 → XP_002937344.3  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3

    UniProtKB/TrEMBL
    F6S0W0
    Conserved Domains (1) summary
    cl21496
    Location:85 → 270
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_018093259.2 → XP_017948748.2  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3

    UniProtKB/TrEMBL
    F6S0W0
    Related
    ENSXETP00000048096.5, ENSXETT00000048096.5
    Conserved Domains (1) summary
    cl21496
    Location:85 → 270
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_018093258.2 → XP_017948747.2  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3

    UniProtKB/TrEMBL
    F6S0W0
    Related
    ENSXETP00000108896.1, ENSXETT00000120496.1
    Conserved Domains (1) summary
    cl21496
    Location:85 → 270
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein Strain
Heading Accession and Version

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