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ATXN7L3 ataxin 7 like 3 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100482597, updated on 8-Mar-2024

Summary

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Gene symbol
ATXN7L3
Gene description
ataxin 7 like 3
Locus tag
PANDA_008448
See related
Ensembl:ENSAMEG00000018341
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 13 NC_048230.1 (27353593..27360884, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217649.1 (586862..593804, complement)

Chromosome 13 - NC_048230.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 16 Neighboring gene uncharacterized LOC117795411 Neighboring gene transmembrane and ubiquitin like domain containing 2 Neighboring gene uncharacterized LOC105237881 Neighboring gene upstream binding transcription factor Neighboring gene solute carrier family 4 member 1 (Diego blood group)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DUBm complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-7-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048230.1 Reference ASM200744v2 Primary Assembly

    Range
    27353593..27360884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019800207.2 → XP_019655766.1  ataxin-7-like protein 3 isoform X1

  2. XM_034639959.1 → XP_034495850.1  ataxin-7-like protein 3 isoform X5

    Conserved Domains (2) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)
    pfam08313
    Location:234 → 263
    SCA7; zinc-binding domain

  3. XM_002919735.4 → XP_002919781.2  ataxin-7-like protein 3 isoform X4

  4. XM_019800208.2 → XP_019655767.1  ataxin-7-like protein 3 isoform X2

    UniProtKB/TrEMBL
    G1MJ46
    Related
    ENSAMEP00000019381.2, ENSAMET00000020148.2

  5. XM_002919736.4 → XP_002919782.2  ataxin-7-like protein 3 isoform X3

Nucleotide Protein
Heading Accession and Version

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