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CHST9 carbohydrate sulfotransferase 9 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100410743, updated on 3-Apr-2024

Summary

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Gene symbol
CHST9
Gene description
carbohydrate sulfotransferase 9
See related
Ensembl:ENSCJAG00000020745
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CHST9 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 13 NC_071454.1 (65202060..65502571, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 13 NC_048395.1 (66288789..66589016, complement)

Chromosome 13 - NC_071454.1Genomic Context describing neighboring genes Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene aquaporin 4 Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member B-like Neighboring gene proliferation-associated protein 2G4-like Neighboring gene uncharacterized LOC108588083

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071454.1 Reference mCalJa1.2.pat.X

    Range
    65202060..65502571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008979643.4 → XP_008977891.1  carbohydrate sulfotransferase 9 isoform X1

    See identical proteins and their annotated locations for XP_008977891.1

    UniProtKB/TrEMBL
    A0A5F4VWX0, F7CJ65
    Conserved Domains (1) summary
    pfam03567
    Location:209 → 438
    Sulfotransfer_2; Sulfotransferase family

  2. XM_054244081.1 → XP_054100056.1  carbohydrate sulfotransferase 9 isoform X2

  3. XM_002757140.5 → XP_002757186.1  carbohydrate sulfotransferase 9 isoform X1

    See identical proteins and their annotated locations for XP_002757186.1

    UniProtKB/TrEMBL
    A0A5F4VWX0, F7CJ65
    Related
    ENSCJAP00000038589.1
    Conserved Domains (1) summary
    pfam03567
    Location:209 → 438
    Sulfotransfer_2; Sulfotransferase family

  4. XM_054244082.1 → XP_054100057.1  carbohydrate sulfotransferase 9 isoform X3

  5. XM_035270790.2 → XP_035126681.1  carbohydrate sulfotransferase 9 isoform X3

    UniProtKB/TrEMBL
    A0A5F4VWX0
    Conserved Domains (1) summary
    pfam03567
    Location:124 → 353
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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