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ABCA13 ATP binding cassette subfamily A member 13 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100400418, updated on 8-Mar-2024

Summary

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Gene symbol
ABCA13
Gene description
ATP binding cassette subfamily A member 13
See related
Ensembl:ENSCJAG00000000920
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
63
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 8 NC_071449.1 (14879136..15332729)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 8 NC_048390.1 (14811167..15258416)

Chromosome 8 - NC_071449.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain-containing family A member 8-like Neighboring gene melanoma inhibitory activity protein 2-like Neighboring gene uridine phosphorylase 1 Neighboring gene cytochrome b-c1 complex subunit 9-like Neighboring gene rab GDP dissociation inhibitor beta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family A member 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071449.1 Reference mCalJa1.2.pat.X

    Range
    14879136..15332729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035253372.2 → XP_035109263.2  ATP-binding cassette sub-family A member 13 isoform X3

    UniProtKB/TrEMBL
    F6YEW4

  2. XM_035253370.2 → XP_035109261.2  ATP-binding cassette sub-family A member 13 isoform X1

  3. XM_035253371.2 → XP_035109262.2  ATP-binding cassette sub-family A member 13 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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