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ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif 6 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100397718, updated on 8-Mar-2024

Summary

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Gene symbol
ADAMTS6
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 6
See related
Ensembl:ENSCJAG00000015704
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (140759540..141108818)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (142350181..142696905)

Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene tubulin beta-8 chain-like Neighboring gene centromere protein K Neighboring gene 60S ribosomal protein L5-like Neighboring gene actin-related protein 2/3 complex subunit 3 Neighboring gene CWC27 spliceosome associated cyclophilin Neighboring gene THO complex subunit 5 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071443.1 Reference mCalJa1.2.pat.X

    Range
    140759540..141108818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035292276.2 → XP_035148167.1  A disintegrin and metalloproteinase with thrombospondin motifs 6 isoform X1

    UniProtKB/TrEMBL
    A0A8I3WPP5, F7B3K4
    Conserved Domains (7) summary
    smart00209
    Location:561 → 613
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:250 → 465
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:719 → 829
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam01562
    Location:43 → 191
    Pep_M12B_propep; Reprolysin family propeptide
    pfam08686
    Location:1083 → 1115
    PLAC; PLAC (protease and lacunin) domain
    pfam17771
    Location:480 → 548
    ADAM_CR_2; ADAM cysteine-rich domain
    pfam19030
    Location:844 → 899
    TSP1_ADAMTS; Thrombospondin type 1 domain

  2. XM_054252627.1 → XP_054108602.1  A disintegrin and metalloproteinase with thrombospondin motifs 6 isoform X2

  3. XM_002744914.4 → XP_002744960.1  A disintegrin and metalloproteinase with thrombospondin motifs 6 isoform X1

    UniProtKB/TrEMBL
    A0A8I3WPP5, F7B3K4
    Related
    ENSCJAP00000029006.1
    Conserved Domains (7) summary
    smart00209
    Location:561 → 613
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:250 → 465
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:719 → 829
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam01562
    Location:43 → 191
    Pep_M12B_propep; Reprolysin family propeptide
    pfam08686
    Location:1083 → 1115
    PLAC; PLAC (protease and lacunin) domain
    pfam17771
    Location:480 → 548
    ADAM_CR_2; ADAM cysteine-rich domain
    pfam19030
    Location:844 → 899
    TSP1_ADAMTS; Thrombospondin type 1 domain

  4. XM_035292277.2 → XP_035148168.1  A disintegrin and metalloproteinase with thrombospondin motifs 6 isoform X3

    Conserved Domains (6) summary
    smart00209
    Location:375 → 427
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:64 → 279
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:533 → 643
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:897 → 929
    PLAC; PLAC (protease and lacunin) domain
    pfam17771
    Location:294 → 362
    ADAM_CR_2; ADAM cysteine-rich domain
    pfam19030
    Location:658 → 713
    TSP1_ADAMTS; Thrombospondin type 1 domain

RNA

  1. XR_008479849.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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