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AQR aquarius intron-binding spliceosomal factor [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100397426, updated on 3-Apr-2024

Summary

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Gene symbol
AQR
Gene description
aquarius intron-binding spliceosomal factor
See related
Ensembl:ENSCJAG00000021021
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (47706466..47840956)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (48385399..48520029)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 770 Neighboring gene 40S ribosomal protein S12-like Neighboring gene 40S ribosomal protein S26-like Neighboring gene transgelin-like Neighboring gene tubulin alpha-1B chain-like Neighboring gene high mobility group protein HMG-I/HMG-Y-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA helicase aquarius
Names
aquarius homolog
intron-binding protein aquarius

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    47706466..47840956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009005600.4 → XP_009003848.1  RNA helicase aquarius isoform X1

    See identical proteins and their annotated locations for XP_009003848.1

    UniProtKB/TrEMBL
    A0A2R8MYX3, F7H585, U3EN21
    Conserved Domains (2) summary
    COG1112
    Location:823 → 1312
    DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
    pfam16399
    Location:18 → 802
    Aquarius_N; Intron-binding protein aquarius N-terminus

  2. XM_054239761.1 → XP_054095736.1  RNA helicase aquarius isoform X4

  3. XM_035259904.2 → XP_035115795.1  RNA helicase aquarius isoform X2

    UniProtKB/TrEMBL
    A0A8I3W7X4, F7H585
    Conserved Domains (3) summary
    cd18808
    Location:1076 → 1259
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:733 → 1088
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:1 → 738
    Aquarius_N; Intron-binding protein aquarius N-terminus

  4. XM_054239760.1 → XP_054095735.1  RNA helicase aquarius isoform X3

Nucleotide Protein
Heading Accession and Version

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