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ALMS1 ALMS1 centrosome and basal body associated protein [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394792, updated on 8-Mar-2024

Summary

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Gene symbol
ALMS1
Gene description
ALMS1 centrosome and basal body associated protein
See related
Ensembl:ENSCJAG00000004144
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 14 NC_071455.1 (39603930..39829469)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 14 NC_048396.1 (38579150..38804662)

Chromosome 14 - NC_071455.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC118147280 Neighboring gene N-acetyltransferase 8 Neighboring gene N-acetyltransferase 8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of centriole replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centrosome-associated protein ALMS1
Names
Alstrom syndrome 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071455.1 Reference mCalJa1.2.pat.X

    Range
    39603930..39829469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035272308.2 → XP_035128199.2  centrosome-associated protein ALMS1 isoform X7

  2. XM_054244825.1 → XP_054100800.1  centrosome-associated protein ALMS1 isoform X2

  3. XM_035272305.2 → XP_035128196.2  centrosome-associated protein ALMS1 isoform X5

  4. XM_035272302.2 → XP_035128193.2  centrosome-associated protein ALMS1 isoform X1

  5. XM_035272303.2 → XP_035128194.2  centrosome-associated protein ALMS1 isoform X3

  6. XM_035272304.2 → XP_035128195.2  centrosome-associated protein ALMS1 isoform X4

  7. XM_035272307.2 → XP_035128198.2  centrosome-associated protein ALMS1 isoform X6

RNA

  1. XR_008476282.1 RNA Sequence

  2. XR_008476283.1 RNA Sequence

  3. XR_008476281.1 RNA Sequence

  4. XR_004733517.2 RNA Sequence

  5. XR_008476280.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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