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ARHGAP5 Rho GTPase activating protein 5 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100388004, updated on 8-Mar-2024

Summary

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Gene symbol
ARHGAP5
Gene description
Rho GTPase activating protein 5
See related
Ensembl:ENSCJAG00000005538
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (62418100..62495902)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (63057370..63136771)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene NUBP iron-sulfur cluster assembly factor, mitochondrial Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene methyl-CpG-binding domain protein 6-like Neighboring gene uncharacterized LOC118144911 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho GTPase-activating protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    62418100..62495902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017977045.3 → XP_017832534.1  rho GTPase-activating protein 5 isoform X1

    UniProtKB/TrEMBL
    F6XPA6, U3C9T9
    Conserved Domains (5) summary
    smart00441
    Location:429 → 481
    FF; Contains two conserved F residues
    cd04373
    Location:1259 → 1443
    RhoGAP_p190; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an ...
    pfam16512
    Location:260 → 338
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cd22220
    Location:592 → 762
    pseudoGTPaseD_p190RhoGAP-B; pseudoGTPase domain found in p190RhoGAP-B and similar proteins
    cl38936
    Location:31 → 246
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_017977044.3 → XP_017832533.1  rho GTPase-activating protein 5 isoform X1

    UniProtKB/TrEMBL
    F6XPA6, U3C9T9
    Related
    ENSCJAP00000010169.2
    Conserved Domains (5) summary
    smart00441
    Location:429 → 481
    FF; Contains two conserved F residues
    cd04373
    Location:1259 → 1443
    RhoGAP_p190; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an ...
    pfam16512
    Location:260 → 338
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cd22220
    Location:592 → 762
    pseudoGTPaseD_p190RhoGAP-B; pseudoGTPase domain found in p190RhoGAP-B and similar proteins
    cl38936
    Location:31 → 246
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_035260314.2 → XP_035116205.1  rho GTPase-activating protein 5 isoform X1

    UniProtKB/TrEMBL
    F6XPA6, U3C9T9
    Conserved Domains (5) summary
    smart00441
    Location:429 → 481
    FF; Contains two conserved F residues
    cd04373
    Location:1259 → 1443
    RhoGAP_p190; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an ...
    pfam16512
    Location:260 → 338
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cd22220
    Location:592 → 762
    pseudoGTPaseD_p190RhoGAP-B; pseudoGTPase domain found in p190RhoGAP-B and similar proteins
    cl38936
    Location:31 → 246
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. XM_054239863.1 → XP_054095838.1  rho GTPase-activating protein 5 isoform X1

    UniProtKB/TrEMBL
    F6XPA6, U3C9T9

  5. XM_035260313.2 → XP_035116204.1  rho GTPase-activating protein 5 isoform X1

    UniProtKB/TrEMBL
    F6XPA6, U3C9T9
    Conserved Domains (5) summary
    smart00441
    Location:429 → 481
    FF; Contains two conserved F residues
    cd04373
    Location:1259 → 1443
    RhoGAP_p190; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an ...
    pfam16512
    Location:260 → 338
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cd22220
    Location:592 → 762
    pseudoGTPaseD_p190RhoGAP-B; pseudoGTPase domain found in p190RhoGAP-B and similar proteins
    cl38936
    Location:31 → 246
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  6. XM_035260312.2 → XP_035116203.1  rho GTPase-activating protein 5 isoform X1

    UniProtKB/TrEMBL
    F6XPA6, U3C9T9
    Conserved Domains (5) summary
    smart00441
    Location:429 → 481
    FF; Contains two conserved F residues
    cd04373
    Location:1259 → 1443
    RhoGAP_p190; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an ...
    pfam16512
    Location:260 → 338
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cd22220
    Location:592 → 762
    pseudoGTPaseD_p190RhoGAP-B; pseudoGTPase domain found in p190RhoGAP-B and similar proteins
    cl38936
    Location:31 → 246
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  7. XM_035260315.2 → XP_035116206.1  rho GTPase-activating protein 5 isoform X1

    UniProtKB/TrEMBL
    F6XPA6, U3C9T9
    Conserved Domains (5) summary
    smart00441
    Location:429 → 481
    FF; Contains two conserved F residues
    cd04373
    Location:1259 → 1443
    RhoGAP_p190; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an ...
    pfam16512
    Location:260 → 338
    RhoGAP-FF1; p190-A and -B Rho GAPs FF domain
    cd22220
    Location:592 → 762
    pseudoGTPaseD_p190RhoGAP-B; pseudoGTPase domain found in p190RhoGAP-B and similar proteins
    cl38936
    Location:31 → 246
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  8. XM_054239864.1 → XP_054095839.1  rho GTPase-activating protein 5 isoform X2

Nucleotide Protein
Heading Accession and Version

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