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armc9 armadillo repeat containing 9 [ Danio rerio (zebrafish) ]

Gene ID: 100334308, updated on 27-Mar-2024

Summary

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Gene symbol
armc9
Gene description
armadillo repeat containing 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
24
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (36531663..36634483)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (36562760..36665584)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 8-like 1 Neighboring gene RNA polymerase II, I and III subunit H Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 Neighboring gene nucleolin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Mutations in ARMC9, which Encodes a Basal Body Protein, Cause Joubert Syndrome in Humans and Ciliopathy Phenotypes in Zebrafish. Van De Weghe JC, et al. Am J Hum Genet, 2017 Jul 6. PMID 28625504, Free PMC Article
  2. Dysfunction of the ciliary ARMC9/TOGARAM1 protein module causes Joubert syndrome. Latour BL, et al. J Clin Invest, 2020 Aug 3. PMID 32453716, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Dysfunction of the ciliary ARMC9/TOGARAM1 protein module causes Joubert syndrome.
    Title: Dysfunction of the ciliary ARMC9/TOGARAM1 protein module causes Joubert syndrome.
  2. ARMC9 localizes to the basal body of the cilium and is upregulated during ciliogenesis.
    Title: Mutations in ARMC9, which Encodes a Basal Body Protein, Cause Joubert Syndrome in Humans and Ciliopathy Phenotypes in Zebrafish.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
lisH domain-containing protein ARMC9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    36531663..36634483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021469647.1 → XP_021325322.1  lisH domain-containing protein ARMC9

    UniProtKB/Swiss-Prot
    E7F187
    UniProtKB/TrEMBL
    A0A8M9P4U6
    Conserved Domains (1) summary
    cl28033
    Location:645 → 808
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein Strain
Heading Accession and Version

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