ARPC1B actin related protein 2/3 complex subunit 1B [Sus scrofa (pig)] - Gene

Summary

Official Symbol: ARPC1Bprovided by VGNC
Official Full Name: actin related protein 2/3 complex subunit 1Bprovided by VGNC
Primary source: VGNC:VGNC:85537
See related: Ensembl:ENSSSCG00000007625
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Broad expression in spleen (RPKM 286.7), lung (RPKM 151.2) and 6 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	3	NC_010445.4 (6329737..6342641)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	3	NC_010445.3 (6520442..6527677, complement)

Chromosome 3 - NC_010445.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

MARC_23753-23754:1027707401:3 (e-PCR)
- UniSTS:268766

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables actin filament binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in Arp2/3 complex-mediated actin nucleation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of Arp2/3 protein complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in actin cytoskeleton	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: actin-related protein 2/3 complex subunit 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001134356.1 → NP_001127828.1 actin-related protein 2/3 complex subunit 1B

See identical proteins and their annotated locations for NP_001127828.1

Status: PROVISIONAL

Source sequence(s)

EU868834

UniProtKB/TrEMBL

A0A480QSK6, A0A4X1U5P2, A0A8D1VHK4, B5APU6, F1RNS7

Conserved Domains (2) summary

sd00039
Location:11 → 50

7WD40; WD40 repeat [structural motif]

cl29593
Location:45 → 264

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010445.4 Reference Sscrofa11.1 Primary Assembly

Range

6329737..6342641

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021085573.1 → XP_020941232.1 actin-related protein 2/3 complex subunit 1B isoform X1

UniProtKB/TrEMBL

A0A480QSK6, A0A4X1U5P2, A0A8D1VHK4, B5APU6, F1RNS7

Related

ENSSSCP00000008146.3, ENSSSCT00000008365.4

Conserved Domains (2) summary

sd00039
Location:11 → 50

7WD40; WD40 repeat [structural motif]

cl29593
Location:45 → 264

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_021085574.1 → XP_020941233.1 actin-related protein 2/3 complex subunit 1B isoform X1

UniProtKB/TrEMBL

A0A480QSK6, A0A4X1U5P2, A0A8D1VHK4, B5APU6, F1RNS7

Conserved Domains (2) summary

sd00039
Location:11 → 50

7WD40; WD40 repeat [structural motif]

cl29593
Location:45 → 264

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...