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ATP6V1C1 ATPase H+ transporting V1 subunit C1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100171885, updated on 3-Apr-2024

Summary

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Gene symbol
ATP6V1C1
Gene description
ATPase H+ transporting V1 subunit C1
Locus tag
CR201_G0028279
See related
Ensembl:ENSPPYG00000018803
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 7 NC_071992.2 (118990102..119038504)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 8 NC_071993.1 (122601305..122649414)

Chromosome 7 - NC_071992.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129047500 Neighboring gene antizyme inhibitor 1 Neighboring gene uncharacterized LOC129047501 Neighboring gene uncharacterized LOC129047502 Neighboring gene uncharacterized LOC134761961 Neighboring gene BAALC binder of MAP3K1 and KLF4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp459P047

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit C 1
Names
ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1
V-ATPase subunit C 1
Vacuolar proton pump subunit C 1
NP_001125006.1
XP_024106287.1
XP_054416818.1
XP_054416819.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131534.1 → NP_001125006.1  V-type proton ATPase subunit C 1

    See identical proteins and their annotated locations for NP_001125006.1

    Status: PROVISIONAL

    Source sequence(s)
    CR857846
    UniProtKB/Swiss-Prot
    Q5R4F1, Q5R4Z5, Q5RDQ7
    UniProtKB/TrEMBL
    A0A2J8UFM2, H2PQZ1
    Related
    ENSPPYP00000021093.3, ENSPPYT00000021936.3
    Conserved Domains (2) summary
    cd14785
    Location:56 → 76
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:5 → 370
    V-ATPase_C; V-ATPase subunit C

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071992.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    118990102..119038504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054560843.2 → XP_054416818.1  V-type proton ATPase subunit C 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5R4F1, Q5R4Z5, Q5RDQ7
    UniProtKB/TrEMBL
    A0A2J8UFM2

  2. XM_054560844.2 → XP_054416819.1  V-type proton ATPase subunit C 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5R4F1, Q5R4Z5, Q5RDQ7
    UniProtKB/TrEMBL
    A0A2J8UFM2

  3. XM_024250519.3 → XP_024106287.1  V-type proton ATPase subunit C 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5R4F1, Q5R4Z5, Q5RDQ7
    UniProtKB/TrEMBL
    A0A2J8UFM2, H2PQZ1
    Conserved Domains (2) summary
    cd14785
    Location:56 → 76
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:5 → 370
    V-ATPase_C; V-ATPase subunit C
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5RDQ7.1 GenPept UniProtKB/Swiss-Prot:Q5RDQ7

Gene LinkOut

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