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ADCK5 aarF domain containing kinase 5 [ Sus scrofa (pig) ]

Gene ID: 100156475, updated on 8-Mar-2024

Summary

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Official Symbol
ADCK5provided by VGNC
Official Full Name
aarF domain containing kinase 5provided by VGNC
Primary source
VGNC:VGNC:85104
See related
Ensembl:ENSSSCG00000005907
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 13.3), kidney (RPKM 6.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (393720..410582, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (482152..499026, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene VPS28 subunit of ESCRT-I Neighboring gene solute carrier family 39 member 4 Neighboring gene cleavage and polyadenylation specific factor 1 Neighboring gene solute carrier family 52 member 2 Neighboring gene F-box and leucine rich repeat protein 6 Neighboring gene transmembrane protein 249

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized aarF domain-containing protein kinase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    393720..410582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005662812.3 → XP_005662869.1  uncharacterized aarF domain-containing protein kinase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8D0V6R4, F1RSN7
    Related
    ENSSSCP00000006316.4, ENSSSCT00000006487.6
    Conserved Domains (2) summary
    COG0661
    Location:129 → 409
    AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
    cd13969
    Location:170 → 421
    ADCK1-like; aarF domain containing kinase 1 and similar proteins

  2. XM_021090463.1 → XP_020946122.1  uncharacterized aarF domain-containing protein kinase 5 isoform X1

    UniProtKB/TrEMBL
    A0A8D0V6R4
    Conserved Domains (1) summary
    cd13969
    Location:170 → 474
    ADCK1-like; aarF domain containing kinase 1 and similar proteins

  3. XM_005662813.3 → XP_005662870.1  uncharacterized aarF domain-containing protein kinase 5 isoform X4

    UniProtKB/TrEMBL
    A0A480T1R8, A0A480VYD1
    Conserved Domains (2) summary
    COG0661
    Location:29 → 325
    AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
    cd13969
    Location:86 → 337
    ADCK1-like; aarF domain containing kinase 1 and similar proteins

  4. XM_021090464.1 → XP_020946123.1  uncharacterized aarF domain-containing protein kinase 5 isoform X3

    UniProtKB/TrEMBL
    A0A480VYD1
    Conserved Domains (1) summary
    cd13969
    Location:86 → 390
    ADCK1-like; aarF domain containing kinase 1 and similar proteins

  5. XM_013996404.1 → XP_013851858.1  uncharacterized aarF domain-containing protein kinase 5 isoform X4

    UniProtKB/TrEMBL
    A0A480T1R8, A0A480VYD1
    Conserved Domains (2) summary
    COG0661
    Location:29 → 325
    AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
    cd13969
    Location:86 → 337
    ADCK1-like; aarF domain containing kinase 1 and similar proteins

RNA

  1. XR_002343661.1 RNA Sequence

Nucleotide Protein
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