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ACTR8 actin related protein 8 [ Sus scrofa (pig) ]

Gene ID: 100154005, updated on 8-Mar-2024

Summary

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Official Symbol
ACTR8provided by VGNC
Official Full Name
actin related protein 8provided by VGNC
Primary source
VGNC:VGNC:85053
See related
Ensembl:ENSSSCG00000011458
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 4.7), kidney (RPKM 3.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (35951601..35988501, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (39034535..39058627, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene decapping mRNA 1A Neighboring gene calcium voltage-gated channel subunit alpha1 D Neighboring gene choline dehydrogenase Neighboring gene interleukin 17 receptor B Neighboring gene selenoprotein K Neighboring gene uncharacterized LOC110256246

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-related protein 8
Names
ARP8 actin related protein 8 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    35951601..35988501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013981789.2 → XP_013837243.1  actin-related protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A286ZT42, A0A4X1VGN9, A0A8D0WG73, A0A8D1G4D6
    Related
    ENSSSCP00000034633.1, ENSSSCT00000053516.3
    Conserved Domains (2) summary
    pfam00022
    Location:30 → 508
    Actin; Actin
    cl17037
    Location:54 → 507
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

  2. XM_001929049.6 → XP_001929084.3  actin-related protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A287ARK3, A0A8D0JQ15, A0A8D0WH51
    Related
    ENSSSCP00000046534.3, ENSSSCT00000041214.3
    Conserved Domains (2) summary
    pfam00022
    Location:141 → 619
    Actin; Actin
    cl17037
    Location:165 → 618
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

RNA

  1. XR_002337581.1 RNA Sequence

  2. XR_002337579.1 RNA Sequence

  3. XR_002337578.1 RNA Sequence

  4. XR_002337572.1 RNA Sequence

  5. XR_002337571.1 RNA Sequence

  6. XR_002337570.1 RNA Sequence

  7. XR_002337574.1 RNA Sequence

  8. XR_002337580.1 RNA Sequence

  9. XR_002337577.1 RNA Sequence

  10. XR_002337573.1 RNA Sequence

  11. XR_002337569.1 RNA Sequence

  12. XR_002337576.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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