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stard9 StAR-related lipid transfer (START) domain containing 9 [ Danio rerio (zebrafish) ]

Gene ID: 100149555, updated on 25-Apr-2024

Summary

Official Symbol
stard9provided by ZNC
Official Full Name
StAR-related lipid transfer (START) domain containing 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-111111-11
See related
Ensembl:ENSDARG00000091548 AllianceGenome:ZFIN:ZDB-GENE-111111-11
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable ATP hydrolysis activity; microtubule binding activity; and plus-end-directed microtubule motor activity. Predicted to be involved in microtubule-based movement. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Orthologous to human STARD9 (StAR related lipid transfer domain containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
chromosome: 17
Exon count:
32
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (38476221..38552963)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (38528638..38605388)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase, polypeptide 5 Neighboring gene codanin 1 Neighboring gene spectrin, beta, erythrocytic Neighboring gene coiled-coil domain containing 88C

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables microtubule binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 
enables microtubule motor activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables plus-end-directed microtubule motor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within lipid transport IEA
Inferred from Electronic Annotation
more info
 
involved_in microtubule-based movement IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within microtubule-based movement IEA
Inferred from Electronic Annotation
more info
 
involved_in system development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of kinesin complex IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in microtubule IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
stAR-related lipid transfer protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    38476221..38552963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001921870.7XP_001921905.4  stAR-related lipid transfer protein 9

    UniProtKB/TrEMBL
    A0A8M1QHM6, E7F0X8
    Related
    ENSDARP00000107755.1, ENSDART00000123298.4
    Conserved Domains (7) summary
    smart00129
    Location:3391
    KISc; Kinesin motor, catalytic domain. ATPase
    cd00060
    Location:486580
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    cl22853
    Location:2391
    Motor_domain; Myosin and Kinesin motor domain
    pfam07321
    Location:639780
    YscO; Type III secretion protein YscO
    pfam11740
    Location:31783251
    KfrA_N; Plasmid replication region DNA-binding N-term
    pfam16183
    Location:390507
    Kinesin_assoc; Kinesin-associated
    cl14643
    Location:33913591
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily