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ATF5 activating transcription factor 5 [ Equus caballus (horse) ]

Gene ID: 100146705, updated on 8-Mar-2024

Summary

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Official Symbol
ATF5provided by VGNC
Official Full Name
activating transcription factor 5provided by VGNC
Primary source
VGNC:VGNC:15612
See related
Ensembl:ENSECAG00000018168
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 10 NC_009153.3 (19928881..19932780)
102 previous assembly EquCab2.0 (GCF_000002305.2) 10 NC_009153.2 (19669342..19673319)

Chromosome 10 - NC_009153.3Genomic Context describing neighboring genes Neighboring gene AKT1 substrate 1 Neighboring gene TBC1 domain family member 17 Neighboring gene interleukin 4 induced 1 Neighboring gene nucleoporin 62 Neighboring gene sialic acid binding Ig like lectin 11 Neighboring gene VRK serine/threonine kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009153.3 Reference EquCab3.0 Primary Assembly

    Range
    19928881..19932780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023650197.1 → XP_023505965.1  cyclic AMP-dependent transcription factor ATF-5

    UniProtKB/TrEMBL
    F6QIY1
    Related
    ENSECAP00000015721.2, ENSECAT00000019222.3
    Conserved Domains (1) summary
    cd14692
    Location:212 → 274
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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