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amotl1 angiomotin like 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145436, updated on 8-Mar-2024

Summary

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Official Symbol
amotl1provided by Xenbase
Official Full Name
angiomotin like 1provided by Xenbase
Primary source
Xenbase:XB-GENE-993664
See related
Ensembl:ENSXETG00000006385
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
jeap
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (164939602..165021264, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (161613124..161839304, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408909 Neighboring gene serine/threonine-protein kinase 4-like Neighboring gene extensin-like Neighboring gene piwi-like RNA-mediated gene silencing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in actin cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in angiogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in establishment of cell polarity involved in ameboidal cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in hippo signaling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in bicellular tight junction IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
angiomotin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126890.1 → NP_001120362.1  angiomotin-like protein 1

    See identical proteins and their annotated locations for NP_001120362.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161051
    UniProtKB/TrEMBL
    A0A803JDR6, B1H2L9
    Conserved Domains (2) summary
    COG1196
    Location:345 → 605
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam12240
    Location:512 → 724
    Angiomotin_C; Angiomotin C terminal

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    164939602..165021264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031895693.1 → XP_031751553.1  angiomotin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8SXU1, A0A803KAW7, F6ZR70
    Related
    ENSXETP00000108880.1, ENSXETT00000105963.1
    Conserved Domains (2) summary
    COG1196
    Location:458 → 718
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam12240
    Location:625 → 837
    Angiomotin_C; Angiomotin C terminal

  2. XM_031895694.1 → XP_031751554.1  angiomotin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A803JDR6, B1H2L9
    Conserved Domains (2) summary
    COG1196
    Location:345 → 605
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam12240
    Location:512 → 724
    Angiomotin_C; Angiomotin C terminal
Nucleotide Protein Strain
Heading Accession and Version

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