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zfand4 zinc finger, AN1-type domain 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100144290, updated on 8-Mar-2024

Summary

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Official Symbol
zfand4provided by Xenbase
Official Full Name
zinc finger, AN1-type domain 4provided by Xenbase
Primary source
Xenbase:XB-GENE-6258311
See related
Ensembl:ENSXETG00000007484
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
An1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (40249661..40273224, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (32064674..32087375, complement)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene arachidonate 5-lipoxygenase Neighboring gene membrane associated ring-CH-type finger 8 Neighboring gene WASH complex subunit 2A Neighboring gene DNA replication helicase/nuclease 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
AN1-type zinc finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    40249661..40273224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012966841.1 → XP_012822295.1  AN1-type zinc finger protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A803JZD5, F6QV61
    Related
    ENSXETP00000016320.5, ENSXETT00000016320.5
    Conserved Domains (3) summary
    cd01802
    Location:1 → 103
    AN1_N; ubiquitin-like domain of AN1
    smart00154
    Location:640 → 678
    ZnF_AN1; AN1-like Zinc finger
    smart00213
    Location:28 → 99
    UBQ; Ubiquitin homologues

  2. XM_012966840.1 → XP_012822294.1  AN1-type zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A803JZD5, A0A8J0SSU5
    Conserved Domains (2) summary
    smart00154
    Location:641 → 679
    ZnF_AN1; AN1-like Zinc finger
    cd01802
    Location:28 → 101
    Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001122817.1: Suppressed sequence

    Description
    NM_001122817.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from chimpanzee: ANUBL1 (GeneID:466278).
Nucleotide Protein Strain
Heading Accession and Version

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