afmid arylformamidase [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: afmidprovided by Xenbase
Official Full Name: arylformamidaseprovided by Xenbase
Primary source: Xenbase:XB-GENE-5885603
See related: Ensembl:ENSXETG00000003006
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	10	NC_030686.2 (26213560..26228878)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	10	NC_030686.1 (18348981..18363745)

Chromosome 10 - NC_030686.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables arylformamidase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within 'de novo' NAD biosynthetic process from tryptophan	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within tryptophan catabolic process	IEA Inferred from Electronic Annotation more info
involved_in tryptophan catabolic process to kynurenine	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within tryptophan catabolic process to kynurenine	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: kynurenine formamidase

NP_001106623.1

EC 3.5.1.9

XP_012826969.1

EC 3.5.1.9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001113152.2 → NP_001106623.1 kynurenine formamidase

See identical proteins and their annotated locations for NP_001106623.1

Status: PROVISIONAL

Source sequence(s)

BC155482

UniProtKB/TrEMBL

A0A6I8PY57, A9JTU4

Related

ENSXETP00000059249.3, ENSXETT00000062006.3

Conserved Domains (1) summary

COG0657
Location:4 → 217

Aes; Acetyl esterase/lipase [Lipid transport and metabolism]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

26213560..26228878

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012971515.3 → XP_012826969.1 kynurenine formamidase isoform X1

UniProtKB/TrEMBL

A0A6I8PY57, A0A8J0SWP4

Conserved Domains (1) summary

COG0657
Location:47 → 269

Aes; Acetyl esterase/lipase [Lipid transport and metabolism]