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ATP2C2 ATPase secretory pathway Ca2+ transporting 2 [ Equus caballus (horse) ]

Gene ID: 100070166, updated on 8-Mar-2024

Summary

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Official Symbol
ATP2C2provided by VGNC
Official Full Name
ATPase secretory pathway Ca2+ transporting 2provided by VGNC
Primary source
VGNC:VGNC:15657
See related
Ensembl:ENSECAG00000005796
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See ATP2C2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
29
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 3 NC_009146.3 (32300546..32377829)
102 previous assembly EquCab2.0 (GCF_000002305.2) 3 NC_009146.2 (31608292..31685543)

Chromosome 3 - NC_009146.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111772804 Neighboring gene uncharacterized LOC111772805 Neighboring gene microRNA mir-9073 Neighboring gene MTOR associated protein, eak-7 homolog Neighboring gene uncharacterized LOC111772806

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-transporting ATPase type 2C member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009146.3 Reference EquCab3.0 Primary Assembly

    Range
    32300546..32377829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023637416.1 → XP_023493184.1  calcium-transporting ATPase type 2C member 2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2LLW9, F7BU46
    Related
    ENSECAP00000042681.2, ENSECAT00000050064.2
    Conserved Domains (1) summary
    cl21460
    Location:85 → 827
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_023637415.1 → XP_023493183.1  calcium-transporting ATPase type 2C member 2 isoform X2

    UniProtKB/TrEMBL
    F7BU46
    Conserved Domains (1) summary
    cd02085
    Location:85 → 925
    P-type_ATPase_SPCA; golgi-associated secretory pathway Ca(2+) transport ATPases, similar to human ATPase secretory pathway Ca(2+) transporting 1/hSPCA1 and Saccharomyces cerevisiae Ca(2+)/Mn(2+)-transporting P-type ATPase, Pmr1p

  3. XM_001499832.6 → XP_001499882.3  calcium-transporting ATPase type 2C member 2 isoform X1

    UniProtKB/TrEMBL
    F7BU46
    Related
    ENSECAP00000054545.2, ENSECAT00000075826.2
    Conserved Domains (6) summary
    TIGR01522
    Location:55 → 931
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase
    COG4087
    Location:646 → 709
    COG4087; Soluble P-type ATPase [General function prediction only]
    pfam00122
    Location:137 → 368
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:756 → 928
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:63 → 125
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:441 → 523
    Cation_ATPase; Cation transport ATPase (P-type)

  4. XM_023637418.1 → XP_023493186.1  calcium-transporting ATPase type 2C member 2 isoform X4

    UniProtKB/TrEMBL
    A0A5F5PXJ5
    Conserved Domains (1) summary
    cl21460
    Location:1 → 812
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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