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APBB1 amyloid beta precursor protein binding family B member 1 [ Equus caballus (horse) ]

Gene ID: 100069964, updated on 8-Mar-2024

Summary

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Official Symbol
APBB1provided by VGNC
Official Full Name
amyloid beta precursor protein binding family B member 1provided by VGNC
Primary source
VGNC:VGNC:15398
See related
Ensembl:ENSECAG00000014015
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 7 NC_009150.3 (77566689..77588780, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 7 NC_009150.2 (75389177..75411415, complement)

Chromosome 7 - NC_009150.3Genomic Context describing neighboring genes Neighboring gene caveolae associated protein 3 Neighboring gene sphingomyelin phosphodiesterase 1 Neighboring gene hemopexin Neighboring gene tripartite motif containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amyloid-beta A4 precursor protein-binding family B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009150.3 Reference EquCab3.0 Primary Assembly

    Range
    77566689..77588780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014741795.2 → XP_014597281.1  amyloid-beta A4 precursor protein-binding family B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0RCT4
    Conserved Domains (3) summary
    cd01271
    Location:535 → 660
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:367 → 507
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:255 → 283
    WW; WW domain

  2. XM_001499662.6 → XP_001499712.2  amyloid-beta A4 precursor protein-binding family B member 1 isoform X2

    See identical proteins and their annotated locations for XP_001499712.2

    UniProtKB/TrEMBL
    A0A9L0RCT4
    Related
    ENSECAP00000012077.2, ENSECAT00000015063.4
    Conserved Domains (3) summary
    cd01271
    Location:533 → 658
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:367 → 505
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:255 → 283
    WW; WW domain

  3. XM_003365383.4 → XP_003365431.1  amyloid-beta A4 precursor protein-binding family B member 1 isoform X1

    See identical proteins and their annotated locations for XP_003365431.1

    UniProtKB/TrEMBL
    A0A9L0RCT4
    Related
    ENSECAP00000012080.3, ENSECAT00000015067.4
    Conserved Domains (3) summary
    cd01271
    Location:535 → 660
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:367 → 507
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:255 → 283
    WW; WW domain

  4. XM_014741796.2 → XP_014597282.1  amyloid-beta A4 precursor protein-binding family B member 1 isoform X5

    UniProtKB/TrEMBL
    A0A5F5PS07
    Conserved Domains (3) summary
    cd01271
    Location:276 → 401
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:108 → 248
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:3 → 24
    WW; WW domain

  5. XM_005612115.3 → XP_005612172.1  amyloid-beta A4 precursor protein-binding family B member 1 isoform X4

    See identical proteins and their annotated locations for XP_005612172.1

    UniProtKB/TrEMBL
    A0A5F5PS07
    Related
    ENSECAP00000051268.1, ENSECAT00000074315.2
    Conserved Domains (3) summary
    cd01271
    Location:312 → 437
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:144 → 284
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:32 → 60
    WW; WW domain

  6. XM_014741797.2 → XP_014597283.1  amyloid-beta A4 precursor protein-binding family B member 1 isoform X6

    UniProtKB/TrEMBL
    A0A5F5PS07
    Conserved Domains (3) summary
    cd01271
    Location:310 → 435
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:144 → 282
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:32 → 60
    WW; WW domain

  7. XM_023645900.1 → XP_023501668.1  amyloid-beta A4 precursor protein-binding family B member 1 isoform X5

    UniProtKB/TrEMBL
    A0A5F5PS07
    Conserved Domains (3) summary
    cd01271
    Location:276 → 401
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:108 → 248
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:3 → 24
    WW; WW domain

  8. XM_023645899.1 → XP_023501667.1  amyloid-beta A4 precursor protein-binding family B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A9L0TKJ9
    Related
    ENSECAP00000087136.1, ENSECAT00000083286.1
    Conserved Domains (3) summary
    cd01272
    Location:367 → 507
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:255 → 283
    WW; WW domain
    cl17171
    Location:535 → 558
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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