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ATG9B autophagy related 9B [ Equus caballus (horse) ]

Gene ID: 100064027, updated on 8-Mar-2024

Summary

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Official Symbol
ATG9Bprovided by VGNC
Official Full Name
autophagy related 9Bprovided by VGNC
Primary source
VGNC:VGNC:15629
See related
Ensembl:ENSECAG00000006591
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 4 NC_009147.3 (102742498..102752192, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 4 NC_009147.2 (102619803..102629470, complement)

Chromosome 4 - NC_009147.3Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 2 Neighboring gene nitric oxide synthase 3 Neighboring gene ATP binding cassette subfamily B member 8 Neighboring gene acid sensing ion channel subunit 3 Neighboring gene cyclin dependent kinase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 9B
Names
ATG9 autophagy related 9 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009147.3 Reference EquCab3.0 Primary Assembly

    Range
    102742498..102752192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023640002.1 → XP_023495770.1  autophagy-related protein 9B isoform X2

    Conserved Domains (1) summary
    pfam04109
    Location:219 → 575
    APG9; Autophagy protein Apg9

  2. XM_023639999.1 → XP_023495767.1  autophagy-related protein 9B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H877
    Conserved Domains (1) summary
    pfam04109
    Location:189 → 545
    APG9; Autophagy protein Apg9

  3. XM_023640001.1 → XP_023495769.1  autophagy-related protein 9B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H877
    Related
    ENSECAP00000030186.2, ENSECAT00000054381.3
    Conserved Domains (1) summary
    pfam04109
    Location:189 → 545
    APG9; Autophagy protein Apg9

  4. XM_023640000.1 → XP_023495768.1  autophagy-related protein 9B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H877
    Conserved Domains (1) summary
    pfam04109
    Location:189 → 545
    APG9; Autophagy protein Apg9

  5. XM_023639998.1 → XP_023495766.1  autophagy-related protein 9B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H877
    Conserved Domains (1) summary
    pfam04109
    Location:189 → 545
    APG9; Autophagy protein Apg9

  6. XM_014739378.2 → XP_014594864.1  autophagy-related protein 9B isoform X3

    UniProtKB/TrEMBL
    A0A3Q2GYX1, F7BL31
    Related
    ENSECAP00000004899.2, ENSECAT00000006824.4
    Conserved Domains (1) summary
    pfam04109
    Location:323 → 679
    APG9; Autophagy protein Apg9
Nucleotide Protein
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