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APOA1 apolipoprotein A1 [ Equus caballus (horse) ]

Gene ID: 100062583, updated on 8-Mar-2024

Summary

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Official Symbol
APOA1provided by VGNC
Official Full Name
apolipoprotein A1provided by VGNC
Primary source
VGNC:VGNC:15413
See related
Ensembl:ENSECAG00000009752
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 7 NC_009150.3 (25388642..25390783, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 7 NC_009150.2 (24881394..24883481, complement)

Chromosome 7 - NC_009150.3Genomic Context describing neighboring genes Neighboring gene apolipoprotein A4 Neighboring gene apolipoprotein C3 Neighboring gene SIK family kinase 3 Neighboring gene uncharacterized LOC111774220 Neighboring gene platelet activating factor acetylhydrolase 1b catalytic subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-density lipoprotein particle receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein A-I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009150.3 Reference EquCab3.0 Primary Assembly

    Range
    25388642..25390783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005611592.3 → XP_005611649.1  apolipoprotein A-I

    See identical proteins and their annotated locations for XP_005611649.1

    UniProtKB/TrEMBL
    A0A3Q2KK07
    Related
    ENSECAP00000023457.2, ENSECAT00000055983.2
    Conserved Domains (2) summary
    pfam01442
    Location:73 → 241
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    cl15692
    Location:116 → 212
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily
Nucleotide Protein
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