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ATP5F1B ATP synthase F1 subunit beta [ Equus caballus (horse) ]

Gene ID: 100059825, updated on 8-Mar-2024

Summary

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Official Symbol
ATP5F1Bprovided by VGNC
Official Full Name
ATP synthase F1 subunit betaprovided by VGNC
Primary source
VGNC:VGNC:15660
See related
Ensembl:ENSECAG00000022627
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
ATP5B
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (75091549..75097530, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 6 NC_009149.2 (74187667..74193649, complement)

Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene RNA binding motif single stranded interacting protein 2 Neighboring gene bromodomain adjacent to zinc finger domain 2A Neighboring gene small nucleolar RNA SNORD59 Neighboring gene small nucleolar RNA SNORD59 Neighboring gene prostaglandin E synthase 3 Neighboring gene cytohesin-2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Determining ACTB, ATP5B and RPL32 as optimal reference genes for quantitative RT-PCR studies of cryopreserved stallion semen. Pérez-Rico A, et al. Anim Reprod Sci, 2014 Oct. PMID 25192831
  2. Housekeeping genes for phylogenetic analysis of eutherian relationships. Kullberg M, et al. Mol Biol Evol, 2006 Aug. PMID 16751257
  3. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. This study showed that beta-actin, L32 ribosomal protein, and ATP5B proteins were the most stabily expressed genes in cryopreserved horse semen.
    Title: Determining ACTB, ATP5B and RPL32 as optimal reference genes for quantitative RT-PCR studies of cryopreserved stallion semen.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven mitochondrial ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial proton-transporting ATP synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase subunit beta, mitochondrial
Names
ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
mitochondrial ATP synthase, H+ transporting F1 complex beta subunit
NP_001182454.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195525.1 → NP_001182454.1  ATP synthase subunit beta, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    PJAA01000007
    UniProtKB/TrEMBL
    F6U187
    Related
    ENSECAP00000020278.2, ENSECAT00000024412.3
    Conserved Domains (4) summary
    PRK09280
    Location:58 → 524
    PRK09280; F0F1 ATP synthase subunit beta; Validated
    cd01133
    Location:131 → 410
    F1-ATPase_beta; F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a ...
    pfam00306
    Location:418 → 525
    ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain
    pfam02874
    Location:63 → 129
    ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009149.3 Reference EquCab3.0 Primary Assembly

    Range
    75091549..75097530 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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