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AFF2 ALF transcription elongation factor 2 [ Equus caballus (horse) ]

Gene ID: 100055437, updated on 8-Mar-2024

Summary

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Official Symbol
AFF2provided by VGNC
Official Full Name
ALF transcription elongation factor 2provided by VGNC
Primary source
VGNC:VGNC:15145
See related
Ensembl:ENSECAG00000021132
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
21
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) X NC_009175.3 (121798004..122269793)
102 previous assembly EquCab2.0 (GCF_000002305.2) X NC_009175.2 (117587164..117923495)

Chromosome X - NC_009175.3Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA1 Neighboring gene FMR1 neighbor Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene uncharacterized LOC111771523 Neighboring gene heat shock transcription factor, X-linked member 3-like Neighboring gene iduronate 2-sulfatase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009175.3 Reference EquCab3.0 Primary Assembly

    Range
    121798004..122269793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023633609.1 → XP_023489377.1  AF4/FMR2 family member 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2GZY9
    Related
    ENSECAP00000018897.4, ENSECAT00000022840.4
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1304
    AF-4; AF-4 proto-oncoprotein

  2. XM_023633611.1 → XP_023489379.1  AF4/FMR2 family member 2 isoform X3

    UniProtKB/TrEMBL
    F6RWX7
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1275
    AF-4; AF-4 proto-oncoprotein

  3. XM_023633610.1 → XP_023489378.1  AF4/FMR2 family member 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2GUL4, A0A3Q2GZY9
    Related
    ENSECAP00000024057.2, ENSECAT00000038507.2
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1300
    AF-4; AF-4 proto-oncoprotein

  4. XM_023633612.1 → XP_023489380.1  AF4/FMR2 family member 2 isoform X4

    UniProtKB/TrEMBL
    F6RWX7
    Related
    ENSECAP00000018901.3, ENSECAT00000022844.4
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1271
    AF-4; AF-4 proto-oncoprotein
Nucleotide Protein
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