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Gm4668 predicted gene 4668 [ Mus musculus (house mouse) ]

Gene ID: 100043817, updated on 8-Feb-2024

Summary

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Official Symbol
Gm4668provided by MGI
Official Full Name
predicted gene 4668provided by MGI
Primary source
MGI:MGI:3782849
See related
Ensembl:ENSMUSG00000111243 AllianceGenome:MGI:3782849
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm4668 in Genome Data Viewer
Location:
9 F3; 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (116018248..116023954)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (116189180..116194886)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene transforming growth factor, beta receptor II Neighboring gene STARR-seq mESC enhancer starr_25414 Neighboring gene predicted gene, 31292 Neighboring gene STARR-positive B cell enhancer ABC_E2919 Neighboring gene predicted gene, 40582 Neighboring gene STARR-seq mESC enhancer starr_25415 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:116123514-116123697 Neighboring gene STARR-positive B cell enhancer mm9_chr9:116125815-116126116 Neighboring gene STARR-positive B cell enhancer ABC_E10589 Neighboring gene STARR-positive B cell enhancer ABC_E6810 Neighboring gene STARR-positive B cell enhancer ABC_E1396 Neighboring gene STARR-seq mESC enhancer starr_25416 Neighboring gene predicted gene, 31410 Neighboring gene STARR-seq mESC enhancer starr_25417 Neighboring gene Tgfbr2 Hedgehog-responsive enhancer Neighboring gene STARR-seq mESC enhancer starr_25420 Neighboring gene STARR-seq mESC enhancer starr_25421 Neighboring gene STARR-seq mESC enhancer starr_25422 Neighboring gene RIKEN cDNA D730003K21 gene Neighboring gene STARR-seq mESC enhancer starr_25424

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152204.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK041339
    Related
    ENSMUST00000214742.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    116018248..116023954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases