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Tmem35b transmembrane protein 35B [ Mus musculus (house mouse) ]

Gene ID: 100039968, updated on 30-Apr-2024

Summary

Official Symbol
Tmem35bprovided by MGI
Official Full Name
transmembrane protein 35Bprovided by MGI
Primary source
MGI:MGI:3758095
See related
Ensembl:ENSMUSG00000070737 AllianceGenome:MGI:3758095
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12942; Zmym6nb
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM35B (transmembrane protein 35B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in kidney adult (RPKM 9.8), bladder adult (RPKM 9.1) and 28 other tissues See more
Orthologs
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Genomic context

Location:
4 D2.2; 4 61.29 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (127019836..127023453)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (127126043..127129660)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9012 Neighboring gene STARR-seq mESC enhancer starr_11419 Neighboring gene zinc finger, MYM domain containing 1 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene STARR-seq mESC enhancer starr_11420 Neighboring gene zinc finger, MYM-type 6 Neighboring gene predicted gene, 25600 Neighboring gene STARR-seq mESC enhancer starr_11421 Neighboring gene STARR-seq mESC enhancer starr_11422 Neighboring gene 40S ribosomal protein S28 pseudogene Neighboring gene STARR-seq mESC enhancer starr_11423 Neighboring gene DLG associated protein 3 Neighboring gene STARR-seq mESC enhancer starr_11425 Neighboring gene STARR-seq mESC enhancer starr_11428 Neighboring gene predicted gene, 52707

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Potential readthrough

Included gene: Zmym6

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane protein 35B
Names
ZMYM6 neighbor protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099319.2NP_001092789.1  transmembrane protein 35B precursor

    See identical proteins and their annotated locations for NP_001092789.1

    Status: VALIDATED

    Source sequence(s)
    AL606985
    Consensus CDS
    CCDS38882.1
    UniProtKB/Swiss-Prot
    A2A7U4, Q3U0Y2
    UniProtKB/TrEMBL
    A2A7U3
    Related
    ENSMUSP00000092302.5, ENSMUST00000094712.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    127019836..127023453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)