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Ctxnd1 cortexin domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 100039239, updated on 8-Mar-2024

Summary

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Official Symbol
Ctxnd1provided by MGI
Official Full Name
cortexin domain containing 1provided by MGI
Primary source
MGI:MGI:3780284
See related
Ensembl:ENSMUSG00000097789 AllianceGenome:MGI:3780284
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm2115
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. Orthologous to human CTXND1 (cortexin domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in adrenal adult (RPKM 19.9), cerebellum adult (RPKM 5.8) and 6 other tissues See more
Orthologs
human all
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Genomic context

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Location:
7 D3; 7 48.35 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (84178182..84230446)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (84528974..84581238)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31284 Neighboring gene STARR-seq mESC enhancer starr_19438 Neighboring gene cathepsin A pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr7:91742914-91743215 Neighboring gene STARR-seq mESC enhancer starr_19439 Neighboring gene fumarylacetoacetate hydrolase Neighboring gene zinc finger, AN1-type domain 6 Neighboring gene STARR-positive B cell enhancer ABC_E2830 Neighboring gene RIKEN cDNA 2610206C17 gene Neighboring gene STARR-positive B cell enhancer mm9_chr7:91838324-91838625

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. Aboudehen K, et al. J Biol Chem, 2018 Jun 15. PMID 29716997, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cortexin domain-containing 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001384188.1 → NP_001371117.1  cortexin domain-containing 1 protein

    Status: VALIDATED

    Source sequence(s)
    AC129605
    UniProtKB/Swiss-Prot
    A0A1B0GST9
    Related
    ENSMUSP00000148068.2, ENSMUST00000180387.3
    Conserved Domains (1) summary
    pfam11057
    Location:5 → 54
    Cortexin; Cortexin of kidney

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    84178182..84230446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1B0GST9.1 GenPept UniProtKB/Swiss-Prot:A0A1B0GST9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials