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ATP5MF ATP synthase membrane subunit f [ Sus scrofa (pig) ]

Gene ID: 100037979, updated on 8-Mar-2024

Summary

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Official Symbol
ATP5MFprovided by VGNC
Official Full Name
ATP synthase membrane subunit fprovided by VGNC
Primary source
VGNC:VGNC:97036
See related
Ensembl:ENSSSCG00000034019
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ATP5J2
Expression
Ubiquitous expression in heart (RPKM 890.1), psoas major muscle (RPKM 506.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (6389338..6396960, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (6655564..6667124)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene BUD31 homolog Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene cleavage and polyadenylation specific factor 4 Neighboring gene zinc finger protein 789-like Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene zinc finger protein 391-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven mitochondrial ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial proton-transporting ATP synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase subunit f, mitochondrial
Names
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2
mitochondrial Atp5j2
NP_001090933.1
XP_020941195.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097464.1 → NP_001090933.1  ATP synthase subunit f, mitochondrial

    See identical proteins and their annotated locations for NP_001090933.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ629139
    UniProtKB/Swiss-Prot
    A1XQR8, Q95339
    Related
    ENSSSCP00000008142.5, ENSSSCT00000008361.5
    Conserved Domains (1) summary
    pfam10206
    Location:8 → 83
    WRW; Mitochondrial F1F0-ATP synthase, subunit f

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    6389338..6396960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021085536.1 → XP_020941195.1  ATP synthase subunit f, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A5G2R0H7
    Related
    ENSSSCP00000070612.1, ENSSSCT00000083363.2
    Conserved Domains (1) summary
    pfam10206
    Location:8 → 44
    WRW; Mitochondrial F1F0-ATP synthase, subunit f
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q95339.4 GenPept UniProtKB/Swiss-Prot:Q95339

Gene LinkOut

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