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dqx1 DEAQ box RNA-dependent ATPase 1 [ Danio rerio (zebrafish) ]

Gene ID: 100002601, updated on 27-Mar-2024

Summary

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Official Symbol
dqx1provided by ZNC
Official Full Name
DEAQ box RNA-dependent ATPase 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-150224-1
See related
AllianceGenome:ZFIN:ZDB-GENE-150224-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable ATP binding activity and helicase activity. Orthologous to human DQX1 (DEAQ-box RNA dependent ATPase 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (72066806..72081263, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (71282329..71295754, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase 7 (inactive) Neighboring gene proline-rich coiled-coil 2B Neighboring gene oxytocin Neighboring gene threonine synthase-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP-dependent RNA helicase DQX1
Names
DEAQ box polypeptide 1 (RNA-dependent ATPase)
XP_021332040.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    72066806..72081263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476365.1 → XP_021332040.1  ATP-dependent RNA helicase DQX1

    UniProtKB/TrEMBL
    A0A8M9QEE6
    Conserved Domains (2) summary
    pfam07717
    Location:469 → 570
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    cl27160
    Location:47 → 385
    HA2; Helicase associated domain (HA2)
Nucleotide Protein Strain
Heading Accession and Version

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