atp6ap1la ATPase H+ transporting accessory protein 1 like a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: atp6ap1laprovided by ZNC
Official Full Name: ATPase H+ transporting accessory protein 1 like aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-110318-1
See related: Ensembl:ENSDARG00000091509 AllianceGenome:ZFIN:ZDB-GENE-110318-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch73-104f13.1
Summary: Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 11

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (42532465..42554327, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (42242089..42263764, complement)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ATPase H+ transporting accessory protein 1 like a; V-type proton ATPase subunit S1-like protein

Names: ATPase, H+ transporting, lysosomal accessory protein 1-like a; atp6ap1l

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386711.1 → NP_001373640.1 ATPase H+ transporting accessory protein 1 like a precursor

Status: VALIDATED

Source sequence(s)

FP067440

UniProtKB/TrEMBL

A0A8M1PSG6

Conserved Domains (1) summary

pfam05827
Location:161 → 310

ATP-synt_S1; Vacuolar ATP synthase subunit S1 (ATP6S1)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007122.7 Reference GRCz11 Primary Assembly

Range

42532465..42554327 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001340588.8 → XP_001340624.2 V-type proton ATPase subunit S1-like protein

Related

ENSDARP00000112413.2, ENSDART00000130573.3

Conserved Domains (1) summary

pfam05827
Location:161 → 310

ATP-synt_S1; Vacuolar ATP synthase subunit S1 (ATP6S1)