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poldip2 polymerase (DNA-directed), delta interacting protein 2 [ Danio rerio (zebrafish) ]

Gene ID: 100000398, updated on 27-Mar-2024

Summary

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Official Symbol
poldip2provided by ZNC
Official Full Name
polymerase (DNA-directed), delta interacting protein 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5881
See related
Ensembl:ENSDARG00000092305 AllianceGenome:ZFIN:ZDB-GENE-030131-5881
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc11h12; wu:fc11h12; wu:fi22f04
Summary
Predicted to enable DNA binding activity. Predicted to be involved in error-free translesion synthesis. Predicted to be active in mitochondrial nucleoid and nucleus. Orthologous to human POLDIP2 (DNA polymerase delta interacting protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (24676919..24690260)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (24741647..24754995)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene smoothelin, like Neighboring gene transmembrane protein 199 Neighboring gene leucine rich repeat containing 75A Neighboring gene v-crk avian sarcoma virus CT10 oncogene homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comparative and evolutionary analysis of the 14-3-3 family genes in eleven fishes. Cao J, et al. Gene, 2018 Jul 1. PMID 29653226
  2. Olfactory imprinting is correlated with changes in gene expression in the olfactory epithelia of the zebrafish. Harden MV, et al. J Neurobiol, 2006 Nov. PMID 17013923
  3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  4. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC55555, MGC174099

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in error-free translesion synthesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrial nucleoid IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
polymerase delta-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212714.1 → NP_997879.1  polymerase delta-interacting protein 2

    See identical proteins and their annotated locations for NP_997879.1

    Status: PROVISIONAL

    Source sequence(s)
    AY398395
    UniProtKB/TrEMBL
    A0A8M1PI20, Q6TGW1
    Related
    ENSDARP00000072478.5, ENSDART00000078014.7
    Conserved Domains (2) summary
    cl01119
    Location:242 → 363
    DUF525; Protein of unknown function (DUF525)
    cl01548
    Location:82 → 208
    YccV-like; Hemimethylated DNA-binding protein YccV like

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    24676919..24690260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157562.4 → XP_005157619.1  polymerase delta-interacting protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005157619.1

    UniProtKB/TrEMBL
    A0A8M1PI20, Q6TGW1
    Conserved Domains (2) summary
    cl01119
    Location:242 → 363
    DUF525; Protein of unknown function (DUF525)
    cl01548
    Location:82 → 208
    YccV-like; Hemimethylated DNA-binding protein YccV like

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394947.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    435636..449498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395323.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    27958..41289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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