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crygm2d12 crystallin, gamma M2d12 [ Danio rerio (zebrafish) ]

Gene ID: 100000256, updated on 27-Mar-2024

Summary

Official Symbol
crygm2d12provided by ZNC
Official Full Name
crystallin, gamma M2d12provided by ZNC
Primary source
ZFIN:ZDB-GENE-070822-19
See related
Ensembl:ENSDARG00000069801 AllianceGenome:ZFIN:ZDB-GENE-070822-19
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:171791
Summary
Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (22204779..22205567, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (22393910..22394698, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene crystallin, gamma M2d6 Neighboring gene crystallin, gamma M2d19 Neighboring gene crystallin, gamma M2d20 Neighboring gene crystallin, gamma M2d5

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of eye lens IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in lens development in camera-type eye IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in visual perception IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100442.1NP_001093912.1  crystallin, gamma M2d12

    See identical proteins and their annotated locations for NP_001093912.1

    Status: PROVISIONAL

    Source sequence(s)
    BC150396
    UniProtKB/TrEMBL
    A0A8M1NE80, A7E2K7, Q504G5
    Related
    ENSDARP00000092644.3, ENSDART00000101869.4
    Conserved Domains (1) summary
    pfam00030
    Location:281
    Crystall; Beta/Gamma crystallin

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    22204779..22205567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394751.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    22903..23691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)