si:dkey-22o12.2 si:dkey-22o12.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:dkey-22o12.2provided by ZNC
Official Full Name: si:dkey-22o12.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-060503-443
See related: Ensembl:ENSDARG00000091513 AllianceGenome:ZFIN:ZDB-GENE-060503-443
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: c3orf70a; si:dkey-24b15.2
Summary: Involved in circadian behavior and nervous system development. Orthologous to human C3orf70 (chromosome 3 open reading frame 70). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (30343714..30366904, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (29539783..29562893, complement)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

z5024 (e-PCR), detects polymorphism
- UniSTS:204847

fc73f03.x1 (e-PCR)
- UniSTS:194403

G40379 (e-PCR)
- UniSTS:27256

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within circadian behavior	IGI Inferred from Genetic Interaction more info	PubMed
involved_in circadian behavior	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in nervous system development	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within nervous system development	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within nervous system development	IGI Inferred from Genetic Interaction more info	PubMed
involved_in nervous system development	IMP Inferred from Mutant Phenotype more info	PubMed

General protein information

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Preferred Names: UPF0524 protein C3orf70 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001126467.1 → NP_001119939.1 UPF0524 protein C3orf70 homolog A

See identical proteins and their annotated locations for NP_001119939.1

Status: PROVISIONAL

Source sequence(s)

CR382370

UniProtKB/Swiss-Prot

Q1LY84

Related

ENSDARP00000105219.2, ENSDART00000125759.3

Conserved Domains (1) summary

pfam15823
Location:8 → 269

UPF0524; UPF0524 of C3orf70

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007112.7 Reference GRCz11 Primary Assembly

Range

30343714..30366904 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021480583.1 → XP_021336258.1 UPF0524 protein C3orf70 homolog A isoform X1

UniProtKB/TrEMBL

A0A8M9Q9Q3

Conserved Domains (1) summary

pfam15823
Location:54 → 264

UPF0524; UPF0524 of C3orf70
XM_021467168.1 → XP_021322843.1 UPF0524 protein C3orf70 homolog A isoform X2

UniProtKB/TrEMBL

A0A8M9P8X2

Conserved Domains (1) summary

pfam15823
Location:1 → 204

UPF0524; UPF0524 of C3orf70