GEO DataSets

(Submitter supplied) To investigate how OsGATA6 regulates heading date, grain number per panicle, and grain phenotypes, we collected panicle primordia of ZH11 and OsGATA6-AM lines at the In2 and In3 stages. We analyzed gene expression using a rice expression profiling chip. Compared with ZH11, OsGATA6-AM lines had 818 up-regulated genes and 284 down-regulated genes

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL8852

6 Samples

Download data: TXT

(Submitter supplied) Ghd7 regulates a range of functions in growth and development in response to environmental cues to maximize the reproductive success of the rice plant. We used microarrays to detail the regulated genes in OX-Ghd7HJ19 transgenic plants.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL2025

8 Samples

Download data: CEL

(Submitter supplied) Two types of small (18-24 nt) non-coding RNAs (ncRNAs), microRNAs (miRNAs) and small interfering RNAs (siRNAs) have been found to exist widely in higher plants. OsDCL3b has just been reported to process the 24-nt phased small RNAs in rice, which are preferentially expressed in panicle. In this study, we find that down-regulated expression of OsDCL3b leads to lower pollen sterility and seed setting rate, which results in decreased grain yield per plant in rice. more...

Organism:

Oryza sativa Japonica Group

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL18525

8 Samples

Download data: XLS

(Submitter supplied) Transcriptome analysis of axillary meristems of rice cultivar Takanari and a near isogenic line that have a chromosomal segment from rice cultivar Habataki.

Organism:

Oryza sativa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24468

36 Samples

Download data: TXT

(Submitter supplied) We report transcriptome profiling of elongating and non-elongating peduncles of rice in two Indian cultivars, Swarna and Pokkali at the time of heading. Sequencing of twelve libraries (three replicates from each stage) yielded >6.9 billion paired-end reads.

Organism:

Oryza sativa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL9147

12 Samples

Download data: XLSX