GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Marchantia polymorpha; Cyanidioschyzon merolae strain 10D

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL32971 GPL32970 GPL32972

26 Samples

Download data: BEDGRAPH, TXT

(Submitter supplied) To evaluate role of PRC2 on transcriptional regulation in Cyanidioschyzon merolae, we generated loss of function mutants of a Ez homolog in Cyanidioschyzon merolae by homologous recombination based mutagenesis. Then we performed comparative transcriptome analyses using data obtained from Cme(z) and WT.

Organism:

Cyanidioschyzon merolae strain 10D

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32972

6 Samples

Download data: GTF, TXT

(Submitter supplied) Cyanidioschyzon merolae (C. merolae) is an acidophilic red alga growing in a naturally low carbon dioxide (CO2) environment. Although it uses a ribulose 1,5-bisphosphate carboxylase/oxygenase with high affinity for CO2, the survival of C. merolae relies on functional photorespiratory metabolism. In this study, we quantified the transcriptomic response of C. merolae to changes in CO2 conditions. We found distinct changes upon shifts between CO2 conditions, such as a concerted up-regulation of photorespiratory genes and responses to carbon starvation. more...

Organism:

Cyanidioschyzon merolae strain 10D

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22971

12 Samples

Download data: XLS

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Cyanidioschyzon merolae strain 10D

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL22971

10 Samples

Download data: TXT

(Submitter supplied) Chromatin immunopreciptation coupled with Illumina sequencing to H3K27me3 occupancy in model red alga, C. merolae. The results revealed preferential abundance over repetitive elements, instead of the genes. This histone mark enriches also over subtelomeric and telomeric regions of the chromosomes. C. merolae H3K27me3 has a canonical repressive function as in the higher eukaryotes and forms differential clusters over the gene bodies with different levels of repression. more...

Organism:

Cyanidioschyzon merolae strain 10D

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL22971

7 Samples

Download data: BROADPEAK

(Submitter supplied) RNA-seq experiment in wildtype Cyanidioschyzon merolae cultures. The aim of the experiment was the comparison of the transcriptomic activity with H3K27me3 profile. The results revealed a negative correlation between expression and H3K27me3 occupancy. The experiment contains 3 biological replicates.

Organism:

Cyanidioschyzon merolae strain 10D

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22971

3 Samples

Download data: TXT

(Submitter supplied) Light is one of the main environmental cues that affects the physiology and behavior of many organisms. The effect of light on genome-wide transcriptional regulation has been well-studied in green algae and plants, but not in red algae. Cyanidioschyzon merolae is used as a model red algae, and is suitable for studies on transcriptomics because of its compact genome with a relatively small number of genes. more...

Organism:

Cyanidioschyzon merolae strain 10D

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19949

4 Samples

Download data: XLSX

(Submitter supplied) Vacuoles and lysosomes are single-membrane-bound organelles involved in diverse functions such as intracellular digestion and storage or secretion of metabolites. To understand their origin, evolution and fundamental features, the identification of proteins comprising these compartments in missing links would be invaluable. So, we isolated the vacuoles from Cyanidioschyzon merolae, which is considered to be one of the most primitive photosynthetic eukaryotes, and identified 46 proteins by matrix-assisted laser desorption/ionization time of flight-mass spectrometry. more...

Organism:

Cyanidioschyzon merolae strain 10D

Type:

Protein profiling by Mass Spec

Platform:

GPL7033

1 Sample

Download data: ZIP

(Submitter supplied) The vacuoles of Cyanidioschyzon merolae strain 10D (Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae) synchronized at interphase. The vacuoles of C. merolae synchronized at interphase were isolated by differential and iodixanol-gradient ultracentrifugation. The supernatant (5 ug of protein) were subjected to SDS-PAGE, cut into 69 slices without staining, and subjected to automatic sample preparation for MALDI-TOF-MS by a robot Xcise (Shimadzu). more...

Organism:

Cyanidioschyzon merolae strain 10D

1 Series

1 Sample

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